ggml_ot.data.load_cellxgene

ggml_ot.data.load_cellxgene(dataset_id, url='https://datasets.cellxgene.cziscience.com', path=None, load=True)

Loads and caches Anndata object from CELLxGENE.

Parameters:

dataset_id str

the filename of the dataset to download

url str, optional

base URL of the CELLxGENE dataset repository, defaults to “https://datasets.cellxgene.cziscience.com”

path PosixPath, str, optional

local path for storing and loading datasets, defaults to None

load bool, optional

whether to load and return the Anndata object, defaults to True

Returns:

Anndata object if load=True

Return type:

Anndata, optional