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Analysis tools: :code:`.gene`
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.. module:: ggml_ot.gene

.. currentmodule:: ggml_ot

The `ggml_ot.gene` module provides tools for identifying and visualizing the most important genes
in low-dimensional embeddings of single-cell data. It includes functions to compute gene importance
from an AnnData object, perform enrichment analysis on top-ranked genes, and visualize enriched
biological terms. These functions help you understand the learned embeddings and identify the genes
that influence cell differences or key components in your data.

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Rank genes in Loadings/Components
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.. autosummary::
   :nosignatures:
   :toctree: ../generated/

   gene.ranking

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Gene Enrichment per Loadings/Components
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.. autosummary::
   :nosignatures:
   :toctree: ../generated/

   gene.enrichment
   gene.top_ranked